multivariate hypergeometric distribution examples

Both heads and … It is shown that the entropy of this distribution is a Schur-concave function of the block-size parameters. My latest efforts so far run fine, but don’t seem to sample correctly. Compute the cdf of a hypergeometric distribution that draws 20 samples from a group of 1000 items, when the group contains 50 items of the desired type. For example when flipping a coin each outcome (head or tail) has the same probability each time. Details For example, we could have an urn with balls of several different colors, or a population of voters who are either democrat, republican, or independent. This example shows how to compute and plot the cdf of a hypergeometric distribution. Effectively, we now have a population of \(m\) objects with \(l\) types, and \(r_i\) is the number of objects of the new type \(i\). Someone told me to use the multinomial distribution but I think the hypergeometric distribution should be used and I don't understand the difference between multinomial and hypergeometric. Example of a multivariate hypergeometric distribution problem. That is, a population that consists of two types of objects, which we will refer to as type 1 and type 0. Suppose that we observe \(Y_j = y_j\) for \(j \in B\). MultivariateHypergeometricDistribution [ n, { m1, m2, …, m k }] represents a multivariate hypergeometric distribution with n draws without replacement from a collection containing m i objects of type i. Details. Description \((Y_1, Y_2, \ldots, Y_k)\) has the multinomial distribution with parameters \(n\) and \((m_1 / m, m_2, / m, \ldots, m_k / m)\): For more information on customizing the embed code, read Embedding Snippets. In the second case, the events are that sample item \(r\) is type \(i\) and that sample item \(s\) is type \(j\). However, this isn’t the only sort of question you could want to ask while constructing your deck or power setup. Once again, an analytic argument is possible using the definition of conditional probability and the appropriate joint distributions. The multivariate hypergeometric distribution has the following properties: ... 4.1 First example Apply this to an example from wiki: Suppose there are 5 black, 10 white, and 15 red marbles in an urn. Previously, we developed a similarity measure utilizing the hypergeometric distribution and Fisher’s exact test [ 10 ]; this measure was restricted to two-class data, i.e., the comparison of binary images and data vectors. Part of "A Solid Foundation for Statistics in Python with SciPy". In the fraction, there are \(n\) factors in the denominator and \(n\) in the numerator. Suppose that we have a dichotomous population \(D\). Add Multivariate Hypergeometric Distribution to scipy.stats. hygecdf(x,M,K,N) computes the hypergeometric cdf at each of the values in x using the corresponding size of the population, M, number of items with the desired characteristic in the population, K, and number of samples drawn, N.Vector or matrix inputs for x, M, K, and N must all have the same size. The conditional distribution of \((Y_i: i \in A)\) given \(\left(Y_j = y_j: j \in B\right)\) is multivariate hypergeometric with parameters \(r\), \((m_i: i \in A)\), and \(z\). The mean and variance of the number of spades. Dear R Users, I employed the phyper() function to estimate the likelihood that the number of genes overlapping between 2 different lists of genes is due to chance. The multivariate hypergeometric distribution is preserved when the counting variables are combined. For distinct \(i, \, j \in \{1, 2, \ldots, k\}\). Usually it is clear \(\P(X = x, Y = y, Z = z) = \frac{\binom{13}{x} \binom{13}{y} \binom{13}{z}\binom{13}{13 - x - y - z}}{\binom{52}{13}}\) for \(x, \; y, \; z \in \N\) with \(x + y + z \le 13\), \(\P(X = x, Y = y) = \frac{\binom{13}{x} \binom{13}{y} \binom{26}{13-x-y}}{\binom{52}{13}}\) for \(x, \; y \in \N\) with \(x + y \le 13\), \(\P(X = x) = \frac{\binom{13}{x} \binom{39}{13-x}}{\binom{52}{13}}\) for \(x \in \{0, 1, \ldots 13\}\), \(\P(U = u, V = v) = \frac{\binom{26}{u} \binom{26}{v}}{\binom{52}{13}}\) for \(u, \; v \in \N\) with \(u + v = 13\). Consider the second version of the hypergeometric probability density function. In the card experiment, a hand that does not contain any cards of a particular suit is said to be void in that suit. Specifically, suppose that \((A, B)\) is a partition of the index set \(\{1, 2, \ldots, k\}\) into nonempty, disjoint subsets. Suppose that \(m_i\) depends on \(m\) and that \(m_i / m \to p_i\) as \(m \to \infty\) for \(i \in \{1, 2, \ldots, k\}\). Suppose again that \(r\) and \(s\) are distinct elements of \(\{1, 2, \ldots, n\}\), and \(i\) and \(j\) are distinct elements of \(\{1, 2, \ldots, k\}\). Combinations of the grouping result and the conditioning result can be used to compute any marginal or conditional distributions of the counting variables. Let the random variable X represent the number of faculty in the sample of size that have blood type O-negative. Suppose that the population size \(m\) is very large compared to the sample size \(n\). the length is taken to be the number required. Specifically, suppose that (A1, A2, …, Al) is a partition of the index set {1, 2, …, k} into nonempty, disjoint subsets. The above examples all essentially answer the same question: What are my odds of drawing a single card at a given point in a match? The mean and variance of the number of red cards. Then The conditional probability density function of the number of spades and the number of hearts, given that the hand has 4 diamonds. \cor\left(I_{r i}, I_{s j}\right) & = \frac{1}{m - 1} \sqrt{\frac{m_i}{m - m_i} \frac{m_j}{m - m_j}} Let \(X\), \(Y\) and \(Z\) denote the number of spades, hearts, and diamonds respectively, in the hand. \end{align}. For \(i \in \{1, 2, \ldots, k\}\), \(Y_i\) has the hypergeometric distribution with parameters \(m\), \(m_i\), and \(n\) The probability density funtion of \((Y_1, Y_2, \ldots, Y_k)\) is given by As in the basic sampling model, we start with a finite population \(D\) consisting of \(m\) objects. We will compute the mean, variance, covariance, and correlation of the counting variables. A probabilistic argument is much better. \(\newcommand{\cor}{\text{cor}}\), \(\var(Y_i) = n \frac{m_i}{m}\frac{m - m_i}{m} \frac{m-n}{m-1}\), \(\var\left(Y_i\right) = n \frac{m_i}{m} \frac{m - m_i}{m}\), \(\cov\left(Y_i, Y_j\right) = -n \frac{m_i}{m} \frac{m_j}{m}\), \(\cor\left(Y_i, Y_j\right) = -\sqrt{\frac{m_i}{m - m_i} \frac{m_j}{m - m_j}}\), The joint density function of the number of republicans, number of democrats, and number of independents in the sample. I think we're sampling without replacement so we should use multivariate hypergeometric. \(\newcommand{\var}{\text{var}}\) The variances and covariances are smaller when sampling without replacement, by a factor of the finite population correction factor \((m - n) / (m - 1)\). \(\P(X = x, Y = y, \mid Z = 4) = \frac{\binom{13}{x} \binom{13}{y} \binom{22}{9-x-y}}{\binom{48}{9}}\) for \(x, \; y \in \N\) with \(x + y \le 9\), \(\P(X = x \mid Y = 3, Z = 2) = \frac{\binom{13}{x} \binom{34}{8-x}}{\binom{47}{8}}\) for \(x \in \{0, 1, \ldots, 8\}\). Now i want to try this with 3 lists of genes which phyper() does not appear to support. For example, we could have. Example 4.21 A candy dish contains 100 jelly beans and 80 gumdrops. A univariate hypergeometric distribution can be used when there are two colours of balls in the urn, and a multivariate hypergeometric distribution can be used when there are more than two colours of balls. If there are Ki type i object in the urn and we take n draws at random without replacement, then the numbers of type i objects in the sample (k1, k2, …, kc) has the multivariate hypergeometric distribution. Let \(z = n - \sum_{j \in B} y_j\) and \(r = \sum_{i \in A} m_i\). \[ \P(Y_1 = y_1, Y_2 = y_2, \ldots, Y_k = y_k) = \frac{\binom{m_1}{y_1} \binom{m_2}{y_2} \cdots \binom{m_k}{y_k}}{\binom{m}{n}}, \quad (y_1, y_2, \ldots, y_k) \in \N^k \text{ with } \sum_{i=1}^k y_i = n \], The binomial coefficient \(\binom{m_i}{y_i}\) is the number of unordered subsets of \(D_i\) (the type \(i\) objects) of size \(y_i\). An alternate form of the probability density function of \(Y_1, Y_2, \ldots, Y_k)\) is (2006). If there are Ki marbles of color i in the urn and you take n marbles at random without replacement, then the number of marbles of each color in the sample (k1,k2,...,kc) has the multivariate hypergeometric distribution. She obtains a simple random sample of of the faculty. There is also a simple algebraic proof, starting from the first version of probability density function above. This appears to work appropriately. In this paper, we propose a similarity measure with a probabilistic interpretation, utilizing the multivariate hypergeometric distribution and the Fisher-Freeman-Halton test. Random number generation and Monte Carlo methods. The distribution of \((Y_1, Y_2, \ldots, Y_k)\) is called the multivariate hypergeometric distribution with parameters \(m\), \((m_1, m_2, \ldots, m_k)\), and \(n\). for the multivariate hypergeometric distribution. EXAMPLE 2 Using the Hypergeometric Probability Distribution Problem: Suppose a researcher goes to a small college of 200 faculty, 12 of which have blood type O-negative. Use the inclusion-exclusion rule to show that the probability that a poker hand is void in at least one suit is Let \(D_i\) denote the subset of all type \(i\) objects and let \(m_i = \#(D_i)\) for \(i \in \{1, 2, \ldots, k\}\). In this section, we suppose in addition that each object is one of \(k\) types; that is, we have a multitype population. Now you want to find the … Note that the marginal distribution of \(Y_i\) given above is a special case of grouping. More generally, the marginal distribution of any subsequence of \( (Y_1, Y_2, \ldots, Y_n) \) is hypergeometric, with the appropriate parameters. Examples. The following results now follow immediately from the general theory of multinomial trials, although modifications of the arguments above could also be used. \cov\left(I_{r i}, I_{r j}\right) & = -\frac{m_i}{m} \frac{m_j}{m}\\ Springer. Suppose that \(r\) and \(s\) are distinct elements of \(\{1, 2, \ldots, n\}\), and \(i\) and \(j\) are distinct elements of \(\{1, 2, \ldots, k\}\). In probability theory and statistics, the hypergeometric distribution is a discrete probability distribution that describes the probability of k {\displaystyle k} successes in n {\displaystyle n} draws, without replacement, from a finite population of size N {\displaystyle N} that contains exactly K {\displaystyle K} objects with that feature, wherein each draw is either a success or a failure. \((W_1, W_2, \ldots, W_l)\) has the multivariate hypergeometric distribution with parameters \(m\), \((r_1, r_2, \ldots, r_l)\), and \(n\). It is used for sampling without replacement \(k\) out of \(N\) marbles in \(m\) colors, where each of the colors appears \(n_i\) times. The number of (ordered) ways to select the type \(i\) objects is \(m_i^{(y_i)}\). In the card experiment, set \(n = 5\). Hypergeometric Distribution Formula – Example #1. \(\newcommand{\N}{\mathbb{N}}\) \(\P(X = x, Y = y, Z = z) = \frac{\binom{40}{x} \binom{35}{y} \binom{25}{z}}{\binom{100}{10}}\) for \(x, \; y, \; z \in \N\) with \(x + y + z = 10\), \(\E(X) = 4\), \(\E(Y) = 3.5\), \(\E(Z) = 2.5\), \(\var(X) = 2.1818\), \(\var(Y) = 2.0682\), \(\var(Z) = 1.7045\), \(\cov(X, Y) = -1.6346\), \(\cov(X, Z) = -0.9091\), \(\cov(Y, Z) = -0.7955\). Suppose now that the sampling is with replacement, even though this is usually not realistic in applications. The difference is the trials are done WITHOUT replacement. 2. Hello, I’m trying to implement the Multivariate Hypergeometric distribution in PyMC3. Recall that if \(I\) is an indicator variable with parameter \(p\) then \(\var(I) = p (1 - p)\). \[ \P(Y_1 = y_1, Y_2 = y_2, \ldots, Y_k = y_k) = \binom{n}{y_1, y_2, \ldots, y_k} \frac{m_1^{(y_1)} m_2^{(y_2)} \cdots m_k^{(y_k)}}{m^{(n)}}, \quad (y_1, y_2, \ldots, y_k) \in \N_k \text{ with } \sum_{i=1}^k y_i = n \]. Results from the hypergeometric distribution and the representation in terms of indicator variables are the main tools. If length(n) > 1, To define the multivariate hypergeometric distribution in general, suppose you have a deck of size N containing c different types of cards. \(\newcommand{\bs}{\boldsymbol}\) This follows immediately, since \(Y_i\) has the hypergeometric distribution with parameters \(m\), \(m_i\), and \(n\). References Specifically, suppose that \((A_1, A_2, \ldots, A_l)\) is a partition of the index set \(\{1, 2, \ldots, k\}\) into nonempty, disjoint subsets. X = the number of diamonds selected. The special case \(n = 5\) is the poker experiment and the special case \(n = 13\) is the bridge experiment. \[ \frac{32427298180}{635013559600} \approx 0.051 \], \(\newcommand{\P}{\mathbb{P}}\) Five cards are chosen from a well shuﬄed deck. Let Wj = ∑i ∈ AjYi and rj = ∑i ∈ Ajmi for j ∈ {1, 2, …, l} \cor\left(I_{r i}, I_{r j}\right) & = -\sqrt{\frac{m_i}{m - m_i} \frac{m_j}{m - m_j}} \\ \cov\left(I_{r i}, I_{s j}\right) & = \frac{1}{m - 1} \frac{m_i}{m} \frac{m_j}{m} eg. logical; if TRUE, probabilities p are given as log(p). Use the inclusion-exclusion rule to show that the probability that a bridge hand is void in at least one suit is A multivariate version of Wallenius' distribution is used if there are more than two different colors. The following exercise makes this observation precise. Additional Univariate and Multivariate Distributions, # Generating 10 random draws from multivariate hypergeometric, # distribution parametrized using a vector, extraDistr: Additional Univariate and Multivariate Distributions. We investigate the class of splitting distributions as the composition of a singular multivariate distribution and a univariate distribution. Arguments Where \(k=\sum_{i=1}^m x_i\), \(N=\sum_{i=1}^m n_i\) and \(k \le N\). The number of spades and number of hearts. For fixed \(n\), the multivariate hypergeometric probability density function with parameters \(m\), \((m_1, m_2, \ldots, m_k)\), and \(n\) converges to the multinomial probability density function with parameters \(n\) and \((p_1, p_2, \ldots, p_k)\). Negative hypergeometric distribution describes number of balls x observed until drawing without replacement to obtain r white balls from the urn containing m white balls and n black balls, and is defined as . Does the multivariate hypergeometric distribution, for sampling without replacement from multiple objects, have a known form for the moment generating function? = 5\ ) a dichotomous population \ ( D\ ) covariance of each pair variables! Have drawn 5 cards randomly without replacing any of the counting variables are.. 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